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Best Laid Plans In the first episode of season 3, the Reds and Blues find themselves scattered across the universe as they attempt to hunt down evil mastermind O'Malley.
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Visiting Old Friends Sarge and Caboose try to escape from a bizarre battle between two groups of unknown Red and Blue soldiers.
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Let's Get Together O'Malley sets his evil plans in motion, while the Reds and Blues debate their next move.
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You're The Bomb, Yo Church and Grif get used to life on the inside, while Simmons and Donut attempt to reprogram the teleporters.
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Make Your Time The Reds and Blues must work together to stop O'Malley and disable the ten megaton bomb inside Church's body.
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We Must Rebuild Grif and Simmons try to make sense of their new futuristic surroundings, while Caboose helps Donut with an important discovery.
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New Toys Sarge and Donut attempt to fix the Warthog while O'Malley and Lopez inspect their new home.
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The Greatest Episode Ever (Episode 45.9) Available only to sponsors or on the Season 3 DVD and produced solely by Gustavo Sorola while the rest of the production crew had been out of town. This episode continues or replaces the events of episode 45, though is non-canon, and features paper cutouts as characters while portraying Simmons as a hero.
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We're Being Watched O'Malley and Lopez receive an unexpected visitor, and the Reds intercept a transmission from an old adversary.
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It's A Biological Fact The Reds and Blues meet up with Tex and plot ways to infiltrate O'Malley's compound.
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Heavy Metal Sarge and Tex lead an offensive against O’Malley, with Caboose doing some heavy lifting.
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Roaming Charges Church seeks help from an ancient computer, while the Reds search for the missing head of Lopez.
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Silver Linings The computer completes the teleporter and reveals its name to be Gary. Church teleports back to Blood Gulch shortly before the series begins. Another Church runs in and tells Gary to teleport him to Sidewinder instead, because he "screwed everything up." On Blood Gulch Church finds that he either has no effect, or causes the previous events by his presence.
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Episode 50 Part 2 Church discovers the event of the past are hard to change, and even harder to believe.
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Have We Met? Church’s travels through time lead him into an unexpected temporal loop of confusion.
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Let's Come To Order Tucker shows off his new bling while the Reds monkey about.
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Hello My Name Is Andrew The Reds debate the source of an incoming distress signal while Caboose introduces everyone to his new friend.
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Defusing The Situation Church tries to placate Andy, and Grif gets the wrong idea.
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Calm Before The Storm O’Malley and Lopez begin their attack… their very, very slow attack.
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The Storm Church tries to figure out the prophecy of the “Great Destroyer” as O’Malley’s Robot Army inches closer.