The crew of the USS Equinox attempts to elude the USS Voyager in order to exploit the nucleogenic lifeforms in a bid to return home.
Stardate: 53049.2. The arrival of three mysterious "individuals" among an influx of visitors to Voyager has mysterious consequences for Seven, who must relive a Borg experience from eight years earlier.
B'Elanna's shuttle is hit by an ion storm and she awakens to find herself among Klingons in the Barge of the Dead, on the way to Klingon Hell.
The Doctor adds daydreaming to his program, imagining himself as the Emergency Command Hologram (ECH) aboard Voyager; but aliens, tapping into his perceptions to observe the crew, prepare an attack when they believe that what they are seeing in the daydreams is real.
Stardate: Unknown. Tom Paris buys a beaten-up old hot-rod of a ship to restore, but B’Ellana begins to worry as Tom grows increasingly obsessed with the ship.
Stardate: Unknown. A mysterious alien attack leaves Tuvok's brain damaged and his personality altered, leaving Neelix to try to rehabilitate him.
Stardate: Unknown. The ship is placed in danger when it comes under attack from a territorial race of aliens known as the Turei. While sheltering on a planet, Captain Janeway tries to make an alliance with its inhabitants, the Vaadwaur. However, she soon begins to think that the Vaadwaur may pose a bigger threat than the enemy above.
Voyager is nearly hit by a mysterious subspace mass and the crew theorize that the debris of an ancient Earth–Mars ship is inside.
After assimilating Voyagers data from the past six years, through an enhancement to her Borg implants, Seven of Nine suspects the ship did not arrive in the Delta Quadrant by accident.
Barclay gets over-involved with holographic recreations of the Voyager crew in his attempts to contact them. This episode also features Deanna Troi.
Stardate: Unknown. As the crew enjoys time off in a holo-program created by Tom Paris, and set in an Irish village named 'Fair Haven,' Captain Janeway falls for a handsome holo-character specifically designed for her. A deadly neutrino wave approaching Voyager shortly bring the festivities to a halt as this wave may prove to be more dangerous than they first imagined.
Voyager is trapped in orbit about a planet with a spacetime differential such that, while its inhabitants live through years, Voyager experiences mere minutes.
Stardate: Unknown. When the Doctor's singing talents are discovered by a technologically superior race, his new found popularity makes him consider resigning his commission to stay on the alien world with his millions of adoring fans.
Stardate: Unknown. The crew of Voyager experience vivid memories and dreams of a battle they don't remember having, with an enemy they have never encountered.
Seven of Nine and Tuvok are kidnapped while on shore leave, and Seven is forced to fight in a gladiatorial contest to the death. (Guest stars include J.G. Hertzler, Jeffrey Combs and Dwayne "The Rock" Johnson.
Chakotay, Kim, Paris, and Neelix are taken hostage when the Delta Flyer is captured by Borg children in a derelict Cube.
Problems arise from running the holographic Irish village of Fair Haven non-stop, when a malfunction leads the holographic characters to become self-aware.
Stardate: Unknown. Ensign Lindsay Ballard returns to Voyager after being killed during a previous away mission. An alien race known as the Kobali, whose only method of reproduction is 'resurrection' of the dead through genetic engineering had revived her and taken her as a new member of their race. When the full extent of her new Kobali genes are activated, they reach a point where she must choose between her old home on the ship, or her new home with her adoptive Kobali family.
The family of Icheb, one of the Borg children, is found, but he is reluctant to rejoin them. Seven, too, is reluctant for him to leave the ship; and his parents are concealing the real reason for desiring his return.
Stardate: Unknown. Captain Janeway takes three crewmen with poor performance records on an away mission in the Delta Flyer in an attempt to bring them to Starfleet standards. However, an unexpected collision with a Dark Matter comet leaves the crew in a perilous situation.
Stardate: Unknown. A group of con artists impersonate Captain Janeway and the crew of Voyager. The crew must find the imposters soon, or they, themselves will be punished for the con artists' crimes.
Torres is stranded on a bronze-age planet after a crash in the Delta Flyer, where she helps a playwright adapt the story of Voyager to the stage. Also, Kim is missing in an escape pod.
Stardate: Unknown. Kes returns to Voyager in a state of rage, blaming Captain Janeway for her past. Using her expanded Ocampan powers in a fit of revenge, she travels through time to deliver the crew to the Vidiians.
The Doctor's creator, Lewis Zimmerman, is dying in the Alpha Quadrant from a disease similar to the Vidiian phage. The Doctor's compressed matrix is transferred to Zimmerman's lab on the Jupiter station, to assist Mr. Barclay and Counselor Troi in attempting to treat the illness.
Stardate: Unknown. When Voyager encounters some engineering problems, Neelix keeps the Borg children entertained by telling the story of an adventure that the crew experienced several months ago, with the ghost that lives on deck twelve.
Janeway, B'Elanna and Tuvok infiltrate a Borg Cube in an attempt to save Borg drones who are trying to develop individuality.