After Jordan revealed that she slept with J.D., he expects the worst from Dr. Cox. Elliot, embarrassed by Jordan's revelation about her lingering feelings for J.D., is avoiding J.D. at all costs. Carla is angry with Turk for not telling her that Dr. Cox was in love with her, and Dr. Cox is annoyed at Dr. Kelso for being played for a non-existent promotion and at J.D. for sleeping with Jordan. NBC did not approve of the musical sequence featuring Colin Hay on screen performing an acoustic version
J.D., Elliot and Turk find themselves alone in the hospital night shift and face responsibilities without supervision for the first time. Luckily, they have Carla there to support and guide them through the night. Meanwhile, Dr. Cox doesn't know what to do, when he realizes that he has feelings for his ex-wife Jordan and is asked (forced actually) to introduce Dr. Kelso at a social event, where he will be receiving an award from the medical board.
Dr. Kelso starts an impromptu competition with the residents, offering an all expenses paid medical conference outing in Reno if they can bring him the most interesting case study. J.D. wants to compete but fears he will fall out of favor with Dr. Cox if he does. The entire hospital takes advantage of Dr. Kelso's annual good mood the day after he renews "marital activities" with his wife Enid. Elliot worries that she is not getting along well with Carla. The opening credits permanently (except e
J.D. and Carla's relationship deteriorates when J.D. accidentally reveals some of Carla's secrets. The surgical residents compete for a trip to Mexico with Dr. Kelso. Elliot worries that she is not presenting a competent image to Dr. Cox and takes on some harrowing cases to improve it.
Elliot sleeps with a handsome doctor she hardly knew and soon becomes the hospital tramp. Turk suffers from his back after operating with Dr. Amato, a very short surgeon. J.D. finds out that wearing a white coat doesn't make him a better doctor, but is upset by having Dr. Cox throw in his face that he made another mistake. And Dr. Kelso is just dying for an opportunity to lash out his anger on Dr. Cox.
J.D.'s older brother Dan (Tom Cavanagh) drops by for a visit, but J.D. cannot hide how ashamed he is of his brother's life. Turk learns a lesson when he makes a bet with Dr. Cox on whether a patient lives or dies. Meanwhile, Sacred Heart staff is in costume for Halloween, and one person in particular is wreaking havoc in a gorilla suit, much to Dr. Kelso's disgust.
All of the male doctors are euphoric due to the visit of Julie Keaton, the pharmaceutical sales rep, except for Dr. Cox, who still believes in treating patients for their best health, instead of trying to get some attention from the hot Ms. Keaton. Meanwhile, J.D. and Elliot argue over a risky decision regarding one of Elliot's patients. Turk tries to talk Carla into entering a practitioner nurse course, so she won't be so underestimated by the doctor's staff.
Dr. Cox and Julie (Heather Locklear) hook up, but Cox's new happiness is complicated when a pregnant Jordan arrives. J.D. and Turk suffer from a poor financial situation and continue to steal food and toilet paper from the hospital. Elliot's father cuts her off after she refuses to become an OBGYN as he wishes.
Ever since her father cut her off financially, Elliot's been feeling the weight of the world on her back. While having to find a new affordable place to live, she also has to face the threat of being sued by a patient whom she told he had only eight months to live. Carla and Jordan hit a sore spot when Carla gives her opinion on Jordan and Perry's relationship. Meanwhile, J.D. has a fight with Dr. Cox and the two dispute over who gets to give the better treatment to two patients with the same p
Problems develop in the relationships of Turk and Carla and of Dr. Cox and Jordan. J.D. considers exactly how much the hospital consumes their lives; the stress and general gross experiences he deals with everyday are stealing his "mojo" just as he starts dating Lisa the Gift Shop Girl (Sarah Lancaster). Having lost the apartment her father paid for, Elliot is forced to live in the back of a moving truck as she has no time to find another place.
Not wanting to repeat their last disastrous relationship, J.D. and Elliot agree to remain "sex buddies," but J.D. is unsatisfied with this arrangement. Turk tries to help out Elliot with her workload, but his efforts backfire. Carla learns a lesson about why hospitals cannot always give definite answers.
J.D.'s feelings for Elliot continue to grow even after they break off casual sex; he tries seeing Lisa (Sarah Lancaster) again. Dr. Cox and Carla misdiagnose a hypochondriac patient (Richard Kind) after not taking his claims seriously. Dr. Kelso teaches Turk a lesson about the small lies their patients tell them.
Elliot demands single-sex locker rooms from Dr. Kelso, who is considering ways he might acquire a bigger office. Turk proposes to Carla, but not in the way he had originally planned. A favorite patient of J.D. is back in the hospital for her heart condition.
Turk's brother Kevin (D.L. Hughley) comes to visit with important news; Turk's feelings of inadequacy and debt to his brother surface. Dr. Townshend (Dick Van Dyke), an elderly doctor liked by everyone, runs into trouble with his best friend Dr. Kelso when J.D. screws up an outdated procedure under his supervision.
This episode is narrated from Dr. Cox's, rather than J.D.'s, viewpoint. Dr. Cox discusses the hospital and Jordan in his sessions with his psychiatrist, Dr. Gross (Eric Bogosian). Elliot is thrilled to meet Paul Flowers (Rick Schroder), an attractive and charming doctor — until she learns he is actually a nurse. Carla finally accepts Turk's proposal.
J.D. and Turk think they've got bad karma after hitting a car and causing an accident, while playing golf on the hospital roof. Dr. Cox bends over backwards to give Jordan as much comfort as possible on her labor day, and she confesses to J.D. that Dr. Cox is the real father. Elliot seeks advice from Carla on how to tell Paul that she's crazy, because they're getting more intimate and she can't hide it anymore. But Carla is feeling too crazy herself with the upcoming wedding.
J.D. comes to admire his patient's private practice doctor, Dr. Peter Fisher (Jay Mohr), but is shocked to find out Peter was actually the reason Jordan and Dr. Cox divorced. The Janitor starts flirting with Elliot, and Carla begins to worry about her appearance. Features a cameo appearance by Jay Leno.
Dr. Cox switches from female to dog names for J.D. after an interesting bestiality rumor about J.D. makes the rounds. Dr. Cox competes with baby Jack for Jordan's attention; relationship troubles crop up for Elliot and Paul and for Turk and Carla. When J.D. accepts a date from Jamie Moyer (Amy Smart), the very attractive wife of a comatose patient, his friends give him flak for it, causing him to tell them all a few home truths. Meanwhile, J.D. is criticized by the Chinese community of Sacred He
When J.D. does a temporary surgery elective, his friendship with Turk suffers as he tries to win popularity. The Janitor gets a new power saw. Dr. Cox plays a prank on Dr. Kelso while he is away, but it gets out of hand. Elliot's slip of the tongue drastically changes her relationship with Paul.
J.D. attends the funeral of Jamie's (Amy Smart) husband, with predictable results. Turk has a sex dream about Elliot and is bewildered and embarrassed by it. Dr. Cox still experiences more mixed feelings about raising a child he still believes is not his.
J.D.'s relationship with Jamie (Amy Smart) takes a few interesting twists; Elliot correctly identifies her as a drama queen. Carla's mother dies. Dr. Cox is stuck with Ted in teaching a sensitivity seminar after Dr. Kelso witnesses Dr. Cox being particularly vicious towards a patient.
The end of the second year has the residents finding their jobs too monotonous; luckily, Spence (Ryan Reynolds), an old college buddy of J.D. and Turk's, visits and lightens things up, perhaps a little too much. Dr. Cox learns the truth about baby Jack and confides in J.D. he does not think he would make a good father. J.D. encourages Cox to imagine being a father, and as Dr. Kelso further attempts to break Elliot's spirit, Dr. Cox steps in.